MRIQC: individual T1w report

Summary

Subject ID: 050_ControlPre.
Date and time: 2018-05-07, 00:24.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.3105230227031944
cnr			4.178476936878429
efc			0.5871935686758923
fber			96.4317855834961
fwhm	avg		3.80205
fwhm	x		3.57942
fwhm	y		4.03214
fwhm	z		3.79459
icvs	csf		0.19467964240919866
icvs	gm		0.47211700951321317
icvs	wm		0.33320334807758817
inu	med		0.9196101427078247
inu	range		0.2855645984411237
qi	1		0.0
qi	2		0.0009539641335758293
rpve	csf		27.88900273305423
rpve	gm		13.216190452384632
rpve	wm		21.32163193895051
size	x		180
size	y		256
size	z		256
snr	csf		2.3633913376801448
snr	gm		10.299516481533965
snr	total		10.749489878940258
snr	wm		19.58556181760666
snrd	csf		14.092479998963713
snrd	gm		29.108736558184326
snrd	total		29.241934767764633
snrd	wm		44.524587746145855
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.6771871546569792
summary	bg	mad	14.71429443359375
summary	bg	mean	55.02661895751953
summary	bg	median	53.825870513916016
summary	bg	n	3001269.0
summary	bg	p05	32.862639617919925
summary	bg	p95	81.55072937011718
summary	bg	stdv	15.165124893188477
summary	csf	k	0.754778001602789
summary	csf	mad	146.21286010742188
summary	csf	mean	326.9571533203125
summary	csf	median	316.515625
summary	csf	n	9872.0
summary	csf	p05	141.29126663208007
summary	csf	p95	549.9133331298826
summary	csf	stdv	133.9175567626953
summary	gm	k	0.12285408193332525
summary	gm	mad	62.350555419921875
summary	gm	mean	655.3055419921875
summary	gm	median	653.7791748046875
summary	gm	n	40704.0
summary	gm	p05	553.3679351806641
summary	gm	p95	762.7581420898438
summary	gm	stdv	63.47590637207031
summary	wm	k	0.9149971973106354
summary	wm	mad	45.1644401550293
summary	wm	mean	998.3588256835938
summary	wm	median	1000.017578125
summary	wm	n	160195.0
summary	wm	p05	908.5255432128906
summary	wm	p95	1078.1213500976562
summary	wm	stdv	51.05875778198242
tpm	overlap	csf	0.21129409968852997
tpm	overlap	gm	0.5384071469306946
tpm	overlap	wm	0.5381829738616943
wm2max			0.6965901137069402

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	548619179bb157e5c7ab4cc4192b37d9
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.