MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.3105230227031944
cnr4.178476936878429
efc0.5871935686758923
fber96.4317855834961
fwhmavg3.80205
fwhmx3.57942
fwhmy4.03214
fwhmz3.79459
icvscsf0.19467964240919866
icvsgm0.47211700951321317
icvswm0.33320334807758817
inumed0.9196101427078247
inurange0.2855645984411237
qi10.0
qi20.0009539641335758293
rpvecsf27.88900273305423
rpvegm13.216190452384632
rpvewm21.32163193895051
sizex180
sizey256
sizez256
snrcsf2.3633913376801448
snrgm10.299516481533965
snrtotal10.749489878940258
snrwm19.58556181760666
snrdcsf14.092479998963713
snrdgm29.108736558184326
snrdtotal29.241934767764633
snrdwm44.524587746145855
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.6771871546569792
summarybgmad14.71429443359375
summarybgmean55.02661895751953
summarybgmedian53.825870513916016
summarybgn3001269.0
summarybgp0532.862639617919925
summarybgp9581.55072937011718
summarybgstdv15.165124893188477
summarycsfk0.754778001602789
summarycsfmad146.21286010742188
summarycsfmean326.9571533203125
summarycsfmedian316.515625
summarycsfn9872.0
summarycsfp05141.29126663208007
summarycsfp95549.9133331298826
summarycsfstdv133.9175567626953
summarygmk0.12285408193332525
summarygmmad62.350555419921875
summarygmmean655.3055419921875
summarygmmedian653.7791748046875
summarygmn40704.0
summarygmp05553.3679351806641
summarygmp95762.7581420898438
summarygmstdv63.47590637207031
summarywmk0.9149971973106354
summarywmmad45.1644401550293
summarywmmean998.3588256835938
summarywmmedian1000.017578125
summarywmn160195.0
summarywmp05908.5255432128906
summarywmp951078.1213500976562
summarywmstdv51.05875778198242
tpmoverlapcsf0.21129409968852997
tpmoverlapgm0.5384071469306946
tpmoverlapwm0.5381829738616943
wm2max0.6965901137069402

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum548619179bb157e5c7ab4cc4192b37d9
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.